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Old 08-21-2012, 06:32 AM   #1
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Location: Phoenix, Arizona

Join Date: Nov 2010
Posts: 2
Default Seurat - Analysis tool for tumor/normal DNA and RNA seq

Hello everyone,

I'd like to present Seurat, an analysis tool that we developed here at TGen. It detects somatic mutation (SNVs, indels, structural variance) and allelic imbalance in paired tumor/normal genome and transcriptome data.

The code was made into a GATK module, so its use will probably be familiar to some. Input is indexed BAMs, and output is split into a VCF file for simple events and a tab-delimited text file for larger events.

The latest release (and documentation) is at and we'd appreciate feedback, comments and suggestions! Right now the software is free from academic and research use.


-- Alexis Christoforides
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