How do people use that?
Use each chromosome separately or combine the fasta sequences and run through maq or tool of choice .. I had this issue earlier when I used contigs and the headers were not too parseable by tools. Any standards on the chromosomes to use, edit their headers before using them as reference..
It is just taking me too long to manage the reference and am looking for a more efficient way to do so !
Use each chromosome separately or combine the fasta sequences and run through maq or tool of choice .. I had this issue earlier when I used contigs and the headers were not too parseable by tools. Any standards on the chromosomes to use, edit their headers before using them as reference..
It is just taking me too long to manage the reference and am looking for a more efficient way to do so !
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