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Old 08-10-2017, 11:21 PM   #4
colindaven
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Location: Germany

Join Date: Oct 2008
Posts: 413
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Good idea. If I were you I'd go for as much Nanopore as I could afford, eg 30X, then create an assembly from this alone using Canu. Then I'd correct the assembly using the nanopore data. In my experience, long reads are always far better than short for contiguous assemblies.
Hybrid - at least in 2016 - was still a bit of a nightmare.
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