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Old 12-16-2016, 03:04 AM   #45
Location: Germany

Join Date: Feb 2016
Posts: 40

Originally Posted by Brian Bushnell View Post
BBTools generally don't care whether paired read input is interleaved or in 2 files, so you don't need to explicitly interleave them. For example, either of these: mode=correct in=reads.fq out=corrected.fq mode=correct in1=read1.fq in2=read2.fq oute1=corrected1.fq oute2=corrected2.fq
For output, this is out1 and out2 or oute1 and oute2 (I don't see oute in the manual).
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