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Old 08-02-2018, 05:08 AM   #25
GenoMax
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Location: East Coast USA

Join Date: Feb 2008
Posts: 6,884
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You can use
Code:
reformat.sh in=your_file.fastq out=newfile.fa
to convert the reads to fasta format.

That said I think mapPacBio.sh should automatically split reads longer than 6k when it does mapping. Is that not working?
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