Hi,
Someone know how can I get the "consensus sequence" from each cluster provided by RepeatExplorer. I mean, Repeat Explorer provides clusters of repeat elements. I want to know how can I get the consensus sequence from each cluster which is used to identify the repeat element through repeatmasker.
I'm using RepeatExplorer with unmapped reads from Begonia's genome. The main clusters are not defined by repeat masker so I would like to get the consensus sequence from each cluster to see what they look like because we know that they probably are specific repeat elements from Begonia.
Someone known?
Thanks!
Someone know how can I get the "consensus sequence" from each cluster provided by RepeatExplorer. I mean, Repeat Explorer provides clusters of repeat elements. I want to know how can I get the consensus sequence from each cluster which is used to identify the repeat element through repeatmasker.
I'm using RepeatExplorer with unmapped reads from Begonia's genome. The main clusters are not defined by repeat masker so I would like to get the consensus sequence from each cluster to see what they look like because we know that they probably are specific repeat elements from Begonia.
Someone known?
Thanks!
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