View Single Post
Old 08-27-2014, 07:50 PM   #52
David Eccles (gringer)
Location: Wellington, New Zealand

Join Date: May 2011
Posts: 807

There is now a [pre]-publication out, authored by Nicholas J. Loman and
Aaron R. Quinlan, that introduces a toolkit for working with nanopore data:


If you squint really hard at figure 1 (or zoom in lots), you can see the read length graph and a graph of cumulative output over time (see attached figure). It shows a median read length of about 8kbp, maximum read length of over 30kbp, with just under 300 Mbp generated in about 28 hours.

There's also another alternative R toolkit from Mick Watson's lab that has been released with a slightly different method of dealing with the data:
Attached Images
File Type: png fig_1_ab_bioinformatics.btu555.png (34.6 KB, 22 views)
gringer is offline   Reply With Quote