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Old 08-13-2015, 08:08 AM   #3
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Location: West Coast

Join Date: Aug 2015
Posts: 6

Originally Posted by vivek_ View Post
That error is very logical if you want the tool to work on bed files. You could flip the coordinates and add a 4th column indicating +/- in the BED file to preserve orientation for such cases before using BEDtools.
ahh I tried that on a much shorted example but didnt flip the coordinates. Thanks!
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