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Old 08-08-2008, 10:53 AM   #55
NGS specialist
Location: Malaysia

Join Date: Apr 2008
Posts: 249

I will be looking out for some benchmark data for > 70bp Illumina runs to test future versions of novoalign/novopaired on. We had anticipated this would be coming and have some ideas on how to handle these.
If anybody could arrange some , public or under NDA, then we'd like that very much to get something out to the community.

Originally Posted by lh3 View Post
I do not know more that you, apfejes. I just wonder why they do not release the program when the benchmark is ready. This might be the best time for "short" read aligners. In a year time (probably half-a-year time), the length of Illumina reads will come to >70bp which will effectively cripple a lot of current programs, including maq unfortunately.
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