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Old 10-17-2014, 02:00 AM   #2
dpryan
Devon Ryan
 
Location: Freiburg, Germany

Join Date: Jul 2011
Posts: 3,480
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You can just add it when converting to BAM. Just make a file with the @HD line and then
Code:
cat HD.txt file.sam | samtools view -Sbo file.bam -
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