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Old 10-17-2014, 02:15 AM   #5
Senior Member
Location: Germany

Join Date: Apr 2012
Posts: 215

What samtools version are you using?
Was there something like "missing EOF marker" in the "error message"?

This is a quite common bug in version 0.1.19 (I think it has been resolved in the newer ones?!). It's actually just a warning and means nothing if you know that your input file was not truncated
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