SEQanswers - View Single Post - Help with bowtie2 for a beginner (windows)

Kennels · 10-23-2013, 07:59 PM

Well there's your problem - your fastq file is empty.
The head command gets the first 10 lines from your file.

what do you get with:

Code:

ls -lh NA11881.fastq

10-23-2013, 07:59 PM	#6
Kennels Senior Member Location: Sydney Join Date: Feb 2011 Posts: 149	Well there's your problem - your fastq file is empty. The head command gets the first 10 lines from your file. what do you get with: Code: ls -lh NA11881.fastq