Hi
I'm trying to install R on a linux CentOS 5.5 with old R version - 2.8.1
I downloaded the DEseq .tar.gz and run R with these commands:
the first time I did this, I got an error about Biobase package, so I installed it with install.packages, I also tried to install genefilter, but then it complains about another package...
Any suggestions?
I'm trying to install R on a linux CentOS 5.5 with old R version - 2.8.1
I downloaded the DEseq .tar.gz and run R with these commands:
Code:
>source("http://bioconductor.org/biocLite.R") >install.packages("locfit") >install.packages("DESeq_1.3.3.tar.gz",repos=NULL) * Installing *source* package 'DESeq' ... ** libs gcc -I/usr/lib64/R/include -I/usr/local/include -fpic -O3 -g -std=gnu99 -c pval.c -o pval.o gcc -shared -Bdirect,--hash-stype=both,-Wl,-O1 -o DESeq.so pval.o -L/usr/lib64/R/lib -lR ** R ** inst ** preparing package for lazy loading Loading required package: Biobase Loading required package: tools Welcome to Bioconductor Vignettes contain introductory material. To view, type 'openVignette()'. To cite Bioconductor, see 'citation("Biobase")' and for packages 'citation(pkgname)'. Loading required package: locfit Loading required package: akima Loading required package: lattice locfit 1.5-6 2010-01-20 Error in loadNamespace(i[[1]], c(lib.loc, .libPaths())) : there is no package called 'genefilter' Calls: <Anonymous> ... namespaceImportFrom -> asNamespace -> loadNamespace Execution halted ERROR: lazy loading failed for package 'DESeq' ** Removing '/usr/lib64/R/library/DESeq' Warning message: In install.packages("DESeq_1.3.3.tar.gz", repos = NULL) : installation of package 'DESeq_1.3.3.tar.gz' had non-zero exit status
Any suggestions?
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