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Old 12-02-2014, 03:32 AM   #3
Neytiri
Junior Member
 
Location: London

Join Date: Nov 2012
Posts: 3
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Hi Alejandro,

Thanks for your reply. After reading your post I understood the issue!

When I do:
> dxr = DEXSeqResults( dxd )
> plotDEXSeq(dxr, gene)
then the exons in the plot are ordered by their positions, i.e E001 E002 E003 etc.

When I do:
> dxr = DEXSeqResults( dxd )
> dxr = dxr[order(dxr$padj),]
> plotDEXSeq(dxr, gene)
then the exons in the plot are ordered by increasing order of padj, e.g. E025 E020 E010 E005 E006 etc.

My issue is now solved. Anyway, I think it would be nicer if reordering the object DEXSeqResults did not affect the order of the exons in the plot.

Thanks again for your attention!
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