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Old 01-20-2017, 02:25 AM   #9
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Location: India

Join Date: May 2010
Posts: 9

Originally Posted by arnoldliao View Post
Anyone experience this issue
Error in simpleLoess(y, x, w, span, degree = degree, parametric = parametric, :
span is too small

I assume this is because my bed file contain sections where there are no reads? Outputs at

*** rest of stdout ***
Calls: loess -> simpleLoess
Execution halted
Package 'mclust' version 5.2
Type 'citation("mclust")' for citing this R package in publications.
PSCBS v0.61.0 (2016-02-03) successfully loaded. See ?PSCBS for help.

Attaching package: 'PSCBS'

The following objects are masked from 'package:base':

append, load

R.cache v0.12.0 (2015-11-12) successfully loaded. See ?R.cache for help.
Loading required package: lattice
Loading required package: grid
Loading required package: parallel
Error in file(file, "rt") : cannot open the connection
Calls: read.table -> file
In addition: Warning message:
In file(file, "rt") :
cannot open file '/apps/outputDEEPCNA//Control.stats.Processed.txt': No such file or directory
Execution halted
I got the same error. Resolved, problem was with the bam file.

Sachin A
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