View Single Post
Old 01-23-2014, 11:06 AM   #7
dietmar13
Senior Member
 
Location: Vienna

Join Date: Mar 2010
Posts: 107
Default Rum

why is RUM always neglected by comparing RNA-seq mappers?
In my hands RUM outperforms other pipelines, e.g. tophat, in sensitivity, especially for spliced reads...

RUM: RNA Seq Unified Mapper
https://github.com/itmat/rum/wiki

RUM is rather slow, but using multithreaded servers allows mapping in tolerable time (compared to sample and library generation and data interpretation)

dietmar
dietmar13 is offline