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Old 06-23-2014, 04:28 PM   #13
muol
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Location: USA

Join Date: Jun 2012
Posts: 10
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Hi Brian,

Is there an option to set read quality encoding in bbnorm? I had to set qin=33 in bbduk for some Illumina 1.9 paired end libraries, but this option doesn't seem to exist in bbnorm (used BBMap v. 32.32 for Java 7).

Thanks
Olaf
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