12-11-2009, 09:23 AM
|
#4
|
|
Member
Location: Sydney, Australia
Join Date: Jul 2009
Posts: 14
|
Quote:
Originally Posted by bioenvisage
can any one tell me the details regarding the alignment output of maq
|
Well, the maq map output itself is binary. You can run the pileup command to give you the read bases and the quality at each position. Check the maq documentation and that should elaborate further what the columns in the output are.
BertieW
|
|
|