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Old 12-11-2009, 09:23 AM   #4
BertieWooster
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Location: Sydney, Australia

Join Date: Jul 2009
Posts: 14
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Quote:
Originally Posted by bioenvisage View Post
can any one tell me the details regarding the alignment output of maq


Well, the maq map output itself is binary. You can run the pileup command to give you the read bases and the quality at each position. Check the maq documentation and that should elaborate further what the columns in the output are.

BertieW
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