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Old 09-03-2008, 01:07 AM   #2
zee
NGS specialist
 
Location: Malaysia

Join Date: Apr 2008
Posts: 249
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Hi.

I've seen that message with single-end read alignments i.e.

maq out.map chr.bfa read1.bfq

So perhaps it's assuming that you didnt submit the other read2.bfq mate-pair file.
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