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Old 07-15-2013, 09:44 AM   #1
Location: Istanbul, Turkey

Join Date: Oct 2012
Posts: 28
Default What to do after finding differentially expressed genes?

Hello all,

Which programs do you use after finding the differentially expressed genes between 2 conditions? I assume, everyone first look at which GO terms are enriched. So far I have used DAVID, attempted to use GSEA (but did not work well, maybe I am doing something wrong). Also I will be happy if anyone can inform me how to arrange the files in GSEA for RNA-seq.

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