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Old 01-20-2014, 04:27 AM   #5
dpryan
Devon Ryan
 
Location: Freiburg, Germany

Join Date: Jul 2011
Posts: 3,480
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It will. You can alter the mismatch score due to an N and the maximum number of allowed Ns if you need to (you'll likely need to tweak the minimum allowable score if you do so).
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