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Old 08-10-2015, 07:59 AM   #3
Senior Member
Location: chicago

Join Date: Jul 2012
Posts: 353

I mounted the directorry to the desktop and added path again.... it recognizes bowtie2 but throws an error:

 dnascopev@ubuntu:~$ cd "/home/dnascopev/Desktop/hg19_fasta"
dnascopev@ubuntu:~/Desktop/hg19_fasta$ bowtie2-build hg19.fa hg19
Traceback (most recent call last):
  File "/home/dnascopev/Desktop/hg19_fasta/bowtie2-2.6.0/bowtie2-build", line 95, in <module>
  File "/home/dnascopev/Desktop/hg19_fasta/bowtie2-2.6.0/bowtie2-build", line 92, in main
    os.execv(build_bin_spec, argv)
OSError: [Errno 2] No such file or directory
If I am reading the error right it can not find the hg19.fa but that file is directory (/home/dnascopev/Desktop/hg19_fasta). Any suggestions? Thanks .
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