View Single Post
Old 08-10-2015, 08:55 AM   #5
cmccabe
Senior Member
 
Location: chicago

Join Date: Jul 2012
Posts: 353
Default

I tried both:

Code:
dnascopev@ubuntu:~/Desktop/hg19_fasta$ bowtie2-build /home/dnascopev/Desktop/hg19_fasta/hg19.fa hg19
Traceback (most recent call last):
  File "/home/dnascopev/Desktop/hg19_fasta/bowtie2-2.6.0/bowtie2-build", line 95, in <module>
    main()
  File "/home/dnascopev/Desktop/hg19_fasta/bowtie2-2.6.0/bowtie2-build", line 92, in main
    os.execv(build_bin_spec, argv)
OSError: [Errno 2] No such file or directory
dnascopev@ubuntu:~/Desktop/hg19_fasta$ bowtie2-build ./hg19.fa hg19
Traceback (most recent call last):
  File "/home/dnascopev/Desktop/hg19_fasta/bowtie2-2.6.0/bowtie2-build", line 95, in <module>
    main()
  File "/home/dnascopev/Desktop/hg19_fasta/bowtie2-2.6.0/bowtie2-build", line 92, in main
    os.execv(build_bin_spec, argv)
OSError: [Errno 2] No such file or directory
I am downloaded from iGenomes, just curious why its not working.

.bashrc
Code:
export PATH=$PATH:/home/dnascopev/Desktop/hg19_fasta/bowtie2-2.6.0
Thanks .
cmccabe is offline   Reply With Quote