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Old 08-10-2015, 10:07 AM   #6
GenoMax
Senior Member
 
Location: East Coast USA

Join Date: Feb 2008
Posts: 6,998
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Have you tried
Code:
$ bowtie2-build -f /home/dnascopev/Desktop/hg19_fasta/hg19.fa hg19
Is that file actually present?

Code:
$ ls -lh /home/dnascopev/Desktop/hg19_fasta/*.fa
These indexes should already be present in Sequences/Bowtie2Index directory (base name genome), if you had downloaded the bundle from iGenomes.
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