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Old 08-10-2015, 01:09 PM   #18
cmccabe
Senior Member
 
Location: chicago

Join Date: Jul 2012
Posts: 353
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the build indexs is running:

Are these normal?

Code:
Warning: Encountered empty reference sequence
Warning: Encountered reference sequence with only gaps
Warning: Encountered reference sequence with only gaps
Warning: Encountered empty reference sequence
Warning: Encountered empty reference sequence
Warning: Encountered reference sequence with only gaps
Warning: Encountered empty reference sequence
Code:
 bowtie2-build -f /home/dnascopev/Desktop/hg19_fasta/hg19.fa /home/dnascopev/Desktop/hg19_fasta/my_hg19
was used to build the index

Code:
 cat *.fa > hg19.fa
was used to concatenate the fa from chromFa.tar.gz

Thank you .
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