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Old 01-13-2016, 03:54 AM   #2
GenoMax
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Location: East Coast USA

Join Date: Feb 2008
Posts: 6,978
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This looks like a recent run (based on the time stamp) so having two separate encodings for the two reads is highly unlikely (unless someone deliberately changed the encoding).

You can easily test the Q-score encoding format by using BBMap like this

Code:
$ testformat.sh in=seq.fq.gz
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