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Old 01-13-2016, 04:20 AM   #4
jordi
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Location: València, Spain

Join Date: Apr 2009
Posts: 48
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Hi mastal and GenoMax,
Thank you for your answers. It seems a bug from the perl script fastqFormatDetect.pl I used to predict the encoding system of my raw sequences since FASTQC and bbmap agree setting a Phred33 enconding system (Illumina 1.8). I got the script from https://github.com/mel-astar/mel-ngs...aster/scripts/

150807_SND405_A_L003_GZX-17_R1.fastq.gz
sanger fastq gz single-ended 125bp

150807_SND405_A_L003_GZX-17_R2.fastq.gz
sanger fastq gz single-ended 125bp


GenoMax, just to know.. what do you mean by time stamp?

Sorry for any inconvenience and thank you very much.
Regards
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