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Old 02-06-2017, 11:49 AM   #6
Senior Member
Location: CT

Join Date: Apr 2015
Posts: 242

taxonomic surveys-I generally want to look at many samples shallowly. I'm considering doing 16/18S + ITS1 to allow for the error rate but would need to do more bioinformatic pipeline writing than I currently have ability/time. I want to do this but think I'll push it to back burner for a few months till either the error rate drops or I have time/find a student to work on some processing pipeline that could leverage both ITS and 16s for clustering.
Microbial ecologist, running a sequencing core. I have lots of strong opinions on how to survey communities, pretty sure some are even correct.
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