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Old 07-14-2017, 02:59 PM   #2
fanli
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Location: California

Join Date: Jul 2014
Posts: 198
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Quote:
Originally Posted by lfaller View Post
Code:
--use-bases-mask Y147,I8nnnn,I8nnnn,Y147
However, as before, all reads ended up in the Undetermined files.
Maybe try looking in the index read files and see if the 8-base barcodes are indeed at the beginning of the index reads.
Code:
--create-fastq-for-index-reads
Quote:
Originally Posted by lfaller View Post
1) Is using --use-bases-mask the best approach?
Seems appropriate to me.
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