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Old 05-24-2012, 04:38 AM   #23
cedance
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Location: Germany

Join Date: Feb 2011
Posts: 108
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EGrassi, About the cleanup, Yes! However, its just to remember the next time I look at the code that I am computing the coordinates of the junctions at open intervals .

I just dint want to introduce any variability by mapping and determining inner distance and standard deviations from transcriptome. I don't think picard estimates inner distance this way. I remember using picard initially and I was not satisfied with the mapping.
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