View Single Post
Old 05-24-2012, 04:38 AM   #23
Senior Member
Location: Germany

Join Date: Feb 2011
Posts: 108

EGrassi, About the cleanup, Yes! However, its just to remember the next time I look at the code that I am computing the coordinates of the junctions at open intervals .

I just dint want to introduce any variability by mapping and determining inner distance and standard deviations from transcriptome. I don't think picard estimates inner distance this way. I remember using picard initially and I was not satisfied with the mapping.
cedance is offline   Reply With Quote