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Old 05-19-2015, 03:52 AM   #15
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Location: East Coast USA

Join Date: Feb 2008
Posts: 6,978

Originally Posted by fdts View Post
Do you recommend quality trimming before mapping using BBMap? I am talking illumina 100bp PE.
I have been searching the forum for a while but could not find a hint.

Unless you have a lot of data that has Q scores of 10 or less you can get away without quality trimming.
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