View Single Post
Old 04-16-2012, 06:37 AM   #2
DineshCyanam
Compendia Bio
 
Location: Ann Arbor

Join Date: Oct 2010
Posts: 35
Default

Re-download the tophat-2.0.0 package as it was updated and try again... (Same Version. Same file name)

Quote:
Originally Posted by gpertea View Post
There are quite a few different problems reported in this thread - I apologize for them. We are aware of a couple of these problems and we are trying to fix them, though we are encountering some difficulties reproducing some of these errors.
We just updated the packages on the website with a couple of last minute fixes so please re-download the tophat-2.0.0 package of your choice (yes, it's the same version, same file names) from http://tophat.cbcb.umd.edu and try running the new version again on your test data. If tophat 2 still fails at any stage in the process please report the failure at tophat.cufflinks@gmail.com - it would also help if you attach a tarball or zip file with the content of the "logs" directory when you post a bug report there.

Thank you,
-Geo
DineshCyanam is offline   Reply With Quote