Thread: blast results
View Single Post
Old 05-16-2011, 12:43 AM   #6
A_Morozov
Member
 
Location: Russia, Irkutsk

Join Date: Feb 2011
Posts: 40
Default

Just taking a query won't work, because it can have different nucleotides (but not gaps) at some sites. After some thinking I see that you don't need any regexps, all you need is like

{
reference[i]='-' if query[i]='-';
}

for each position in sequences. Hope you can grab some sequences, dude.
But yes, I'd like to know why he would want to do something like this.
A_Morozov is offline   Reply With Quote