Hi,
I am a beginner, and I just downloaded and tried CONTRA before using it on my samples. I first ran the test files provided. It worked paritally until it came to the reference file part and it says:
Error: The requested fasta database file (human_g1k_v37.fasta) could not be opened. Exiting!
Creating VCF file ...
ContraTest/sampleName/table/CNATable.10rd.10bases.20bins.vcf created.
Done...
The /Table/CNATable.10rd.10bases.20bins.txt is 1.9 MB in size. The CNATable.10rd.10bases.20bins.DetailsFILTERED.txt has just the headings. The VCF file is also empty with just the headers.
I re-downloaded the fasta file and still the same error. Can someone pl. help address this? the created vcf file, ofcourse is empty.
Thanks,
Thane
I am a beginner, and I just downloaded and tried CONTRA before using it on my samples. I first ran the test files provided. It worked paritally until it came to the reference file part and it says:
Error: The requested fasta database file (human_g1k_v37.fasta) could not be opened. Exiting!
Creating VCF file ...
ContraTest/sampleName/table/CNATable.10rd.10bases.20bins.vcf created.
Done...
The /Table/CNATable.10rd.10bases.20bins.txt is 1.9 MB in size. The CNATable.10rd.10bases.20bins.DetailsFILTERED.txt has just the headings. The VCF file is also empty with just the headers.
I re-downloaded the fasta file and still the same error. Can someone pl. help address this? the created vcf file, ofcourse is empty.
Thanks,
Thane
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