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Old 10-02-2017, 08:05 AM   #1
pederworning
Junior Member
 
Location: Copenhagen, Denmark

Join Date: Feb 2011
Posts: 4
Unhappy Gviz Installation

Hello I am using R 3.2.3 on ubuntu 16.04 LTS and I can't the R package Gviz

I have done the following:

source("https://bioconductor.org/biocLite.R")

biocLite("Gviz")

I think the problem is with biovizBase and when I try to install that I get the following warnings and error messages

biocLite("biovizBase")

Warning: multiple methods tables found for ‘unlist’

Warning: replacing previous import by ‘S4Vectors::unlist’ when loading ‘biovizBase’
Warning: replacing previous import by ‘S4Vectors::unlist’ when loading ‘IRanges’
Error : Functions found when exporting methods from the namespace ‘IRanges’ which are not S4 generic: ‘which.max’, ‘which.min’
ERROR: lazy loading failed for package ‘biovizBase’
* removing ‘/usr/local/lib/R/site-library/biovizBase’

The downloaded source packages are in
‘/tmp/RtmpVEQwqp/downloaded_packages’
Warning message:
In install.packages(pkgs = doing, lib = lib, ...) :
installation of package ‘biovizBase’ had non-zero exit status

What should I do to install Gviz and biovizBase?

Thanks Peder
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