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Old 10-04-2017, 10:24 AM   #42
Brian Bushnell
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Location: Walnut Creek, CA

Join Date: Jan 2014
Posts: 2,707

The numbers of mapped reads do not add up to the same record in each case... it seems like the program is crashing and not processing all the reads, or else the input is different. The output is deterministic for single-ended reads so I can't see any other explanation. Does the program print an error message?
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