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Old 10-12-2017, 07:17 AM   #53
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Location: East Coast USA

Join Date: Feb 2008
Posts: 6,794

@Brian is doing something very specific to remove human contamination in JGI's non-human samples.

Re-reading your original question it would be good to know if your contaminants are "close" relatives or can be considered a distant species. Success or failure of bbsplit is going to largely depend on that. No tool is going to be able to separate reads from a very closely related species based on sequence alone.

Last edited by GenoMax; 10-12-2017 at 07:38 AM.
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