Thread: RDXplorer
View Single Post
Old 11-29-2011, 09:44 PM   #1
songsy
Junior Member
 
Location: Ann Arbor

Join Date: Oct 2011
Posts: 6
Default RDXplorer

I'm using SVmerge. One of the tools is RDXplorer. I run the run.sh. It first picked q0 items and write into a sam file. And then it uses samtools mpileup to call variants. But it doesn't work, showing that :
[bam_header_read] EOF marker is absent. The input is probably truncated.
[bam_header_read] invalid BAM binary header (this is not a BAM file).

The script truncate the bam file itself and it doesn't move on. What can I do?
Thank you very much
songsy is offline   Reply With Quote