Hi all,
I successfully went along the first steps of BFAST pipeline, including the indexes creation, but got the below copied error when running 'bfast match' step with the following command for a fastq test file with 9 reads:
bfast match -f reference_genome.fa -A 1 -r test.fastq -i 1 -I 2-10 1> matches.bmf 2> match.log &
Contents of match.log:
(...)
Searching index file 1/1 (index #1, bin #1) complete...
Found 4 matches.
Found matches for 4 reads.
Copying unmatched reads for secondary index search.
Splitting unmatched reads into temp files.
bfast: RunMatch.c:718: FindMatchesInIndexSet: Assertion `numReads == numWritten' failed.
Splitting unmatched reads into temp files.
bfast: RunMatch.c:718: FindMatchesInIndexSet: Assertion `numReads == numWritten' failed.
Any idea?
Thanks in advance.
I successfully went along the first steps of BFAST pipeline, including the indexes creation, but got the below copied error when running 'bfast match' step with the following command for a fastq test file with 9 reads:
bfast match -f reference_genome.fa -A 1 -r test.fastq -i 1 -I 2-10 1> matches.bmf 2> match.log &
Contents of match.log:
(...)
Searching index file 1/1 (index #1, bin #1) complete...
Found 4 matches.
Found matches for 4 reads.
Copying unmatched reads for secondary index search.
Splitting unmatched reads into temp files.
bfast: RunMatch.c:718: FindMatchesInIndexSet: Assertion `numReads == numWritten' failed.
Splitting unmatched reads into temp files.
bfast: RunMatch.c:718: FindMatchesInIndexSet: Assertion `numReads == numWritten' failed.
Any idea?
Thanks in advance.
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