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  • Error in VST package of DESeq

    Hi guys,
    Is the VST package of DESeq still functional? Because most of the functions of VST including getVarianceStabilizedData() seem to be dysfunctional in R version 3.0.1 and DESeq version 1.12.1. Please help. Is this just a version trouble?

  • #2
    Dear Ayana

    the DESeq package is still supported including the getVarianceStabilizedData function etc. It is not clear what you mean by 'dysfunctional'? If you have a problem, can you please post a reproducible example of the code you are running and in what ways it does not do what you think it should.

    In addition:
    • we now recommend using DESeq2 for new projects.
    • you might benefit from using a newer R (current release is R3.1)


    Hope this helps - best wishes

    Wolfgang
    Wolfgang Huber
    EMBL

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