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Old 11-15-2009, 07:05 PM   #225
Senior Member
Location: Vancouver, Canada

Join Date: Feb 2008
Posts: 236

Depends what you're trying to do - I've used Vancouver Short Read Analysis Package/FindPeaks (my own software) for RNA-Seq (alternative exon expression) and had good luck - I don't use it in windows, myself, but java is cross-platform and I know people have successfully used in that environment.
The more you know, the more you know you don't know. —Aristotle
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