SEQanswers - View Single Post - Strange memory corruption error in BFAST match step

kwicher · 09-03-2011, 04:41 PM

Hello

I have 8 files with 50bp SE SOLiD reads. For each and single file I am getting the same error during match step:
*** glibc detected *** /mnt/fastfs/bin/bfast: malloc(): memory corruption: 0x000000000065cf30 *** (memory adresses are different of course).

I am using the bfast-0.6.5a and all standard parameters and masks, and I am mapping against the mRNA refseqs. Files with reads are about 5Gb and I have 32G memory.

Any ideas how to solve the problem

Thanks

K

09-03-2011, 04:41 PM	#13
kwicher Junior Member Location: Cambridge Join Date: Jan 2011 Posts: 7	Bfast memory corruption error on all 8 read files Hello I have 8 files with 50bp SE SOLiD reads. For each and single file I am getting the same error during match step: * glibc detected * /mnt/fastfs/bin/bfast: malloc(): memory corruption: 0x000000000065cf30 *** (memory adresses are different of course). I am using the bfast-0.6.5a and all standard parameters and masks, and I am mapping against the mRNA refseqs. Files with reads are about 5Gb and I have 32G memory. Any ideas how to solve the problem Thanks K