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Old 04-17-2012, 06:45 AM   #16
biofreak
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Location: USA

Join Date: Jun 2011
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yes. It did work.. I then split the fastq files per barcode using fastx barcode splitter. However, it still did not solve my problem of less number of reads being aligned after running tophat. Also, fastq files I obtained from fastx and casava were totally different!
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