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Old 03-18-2014, 11:09 AM   #38
shriram
Member
 
Location: UK

Join Date: May 2010
Posts: 13
Angry

Hi,
I was looking at the expression data from pathview object and original data supplied to pathview, I found discrepancies in the two values:

Original count data (human data from reference manual):
> cnts.d["120", ]
ERR127302 ERR127303 ERR127304 ERR127305
0.277 0.577 0.441 0.021

output from Pathview object for human data from reference manual
>pv.out.list[1]
ERR127302 ERR127303 ERR127304 ERR127305
0.3952 0.8842 1.628 1.1983

Does pathview transforms the original data before plotting on the kegg pathways?

THanks,
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