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Old 03-25-2014, 03:58 AM   #18
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Originally Posted by Thias View Post
I guess bbmap recognizes that there are more cores available on the system, than I am allowing for the job via the job script and tries to use them nevertheless?
Are you explicitly indicating number of threads to use for the bbmap command by using the "threads=x" option (BTW: this option is set to "auto" by default so unless you specify a number bbmap will try to use all cores)?
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