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Old 03-25-2014, 06:49 AM   #19
Location: Münster, Germany

Join Date: Mar 2013
Posts: 42

Yes, I set the threads=8 option and also a memory limit of 32g for bbmap.

However I realised that I initially wrote the job script in a way that the scheduler could assign random distributed cores to the job. When I limited that only to cores of one particular node, then everything runs smoothly. So no problem with bbmap, only with me using the batch system correctly .

Last edited by Thias; 03-25-2014 at 07:12 AM.
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