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Old 04-25-2010, 04:09 AM   #19
Location: Earth

Join Date: Apr 2010
Posts: 34

Hi All,

We recently completed first chip-seq run in our laboratory. We could find a few good peaks with MACS. What I want to do is find the distribution of the distances of all the genes that are closes to the peaks on their respective 5' and 3' end. Is there a simple way to do it. Naturally I have the genomic coordinates. If anybody has done this before, it will help most helpful else I will try to write a tool to get it done.

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