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Old 08-28-2015, 09:25 PM   #89
BobbyT
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Location: Melbourne

Join Date: Aug 2015
Posts: 2
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Hi bigmw,

Thanks for the reply. I think I understand where you're coming from. However if I generate a sample wide heatmap with heatmap() or the like you can see that there are differences between the 'control' samples. I should probably say that I have 2 groupss with 3 replicates in each group and it goes witbout saying that biological samples, even from the same 'group', are never identical. I would have thought that this variation would be able to be visualised for all samples, even at the gene set/pathway level.
i can understand why this hasn't been included in the package and I can talk my way around it but it woumd have been nice to see what baseline is doi g at the pathway level too
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