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Old 04-14-2013, 10:07 PM   #1
Junior Member
Location: India

Join Date: Mar 2013
Posts: 9
Default Tophat Exon -intron coverage

Hi everyone
i mapped my high quality reads on my reference genome using Tophat 2.0.7 ver. Now i want to know how many reads fall (mapped) in my exon and intron regions. and how many reads fall in intergenic regions. i stucked this place. Is anybody know how can i get exon intron and intrgenic reads mapping from my mapping file. Any suggestions will appreciate. Thanks in advance.
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