I have paired-end (76bp) output from a GA in which I would like to try snp discovery. The hiccup is there is no reference genome for my specie.
Does anyone have any ideas, or know any tool that could do this?
Most of the tools that do snp discovery well, use a pre aligned dataset to work on. If I were to assemble the data, is there something that could to ace->(snp discovery tool format) to do the work?
Thanks
Does anyone have any ideas, or know any tool that could do this?
Most of the tools that do snp discovery well, use a pre aligned dataset to work on. If I were to assemble the data, is there something that could to ace->(snp discovery tool format) to do the work?
Thanks
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